J3_7O7Z_034

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAGAUCAAAACCAACCC*GGCGGCUUUG*CUAG

Length

31 nucleotides

Bulged bases

7O7Z|1|A2|C|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|A2|C|223
7O7Z|1|A2|A|224
7O7Z|1|A2|G|225
7O7Z|1|A2|A|226
7O7Z|1|A2|U|227
7O7Z|1|A2|C|228
7O7Z|1|A2|A|229
7O7Z|1|A2|A|230
7O7Z|1|A2|A|231
7O7Z|1|A2|A|232
7O7Z|1|A2|C|233
7O7Z|1|A2|C|234
7O7Z|1|A2|A|235
7O7Z|1|A2|A|236
7O7Z|1|A2|C|237
7O7Z|1|A2|C|238
7O7Z|1|A2|C|239
*
7O7Z|1|A2|G|280
7O7Z|1|A2|G|281
7O7Z|1|A2|C|282
7O7Z|1|A2|G|283
7O7Z|1|A2|G|284
7O7Z|1|A2|C|285
7O7Z|1|A2|U|286
7O7Z|1|A2|U|287
7O7Z|1|A2|U|288
7O7Z|1|A2|G|289
*
7O7Z|1|A2|C|296
7O7Z|1|A2|U|297
7O7Z|1|A2|A|298
7O7Z|1|A2|G|299

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

Ribosomal protein eS4

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11