J3_7O7Z_046

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

7O7Z|1|B5|U|4621, 7O7Z|1|B5|A|4677, 7O7Z|1|B5|C|4679, 7O7Z|1|B5|A|4682, 7O7Z|1|B5|C|4683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|B5|G|4498
7O7Z|1|B5|U|4499
7O7Z|1|B5|U|4500
7O7Z|1|B5|G|4501
*
7O7Z|1|B5|C|4618
7O7Z|1|B5|C|4619
7O7Z|1|B5|U|4620
7O7Z|1|B5|U|4621
7O7Z|1|B5|C|4622
*
7O7Z|1|B5|G|4675
7O7Z|1|B5|C|4676
7O7Z|1|B5|A|4677
7O7Z|1|B5|C|4678
7O7Z|1|B5|C|4679
7O7Z|1|B5|G|4680
7O7Z|1|B5|C|4681
7O7Z|1|B5|A|4682
7O7Z|1|B5|C|4683
7O7Z|1|B5|G|4684
7O7Z|1|B5|U|4685
7O7Z|1|B5|U|4686
7O7Z|1|B5|C|4687

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain BM

Ribosomal protein L14

Chain BO

Ribosomal protein uL13

Chain Bf

eL33