J3_7O7Z_047

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CA(PSU)*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

7O7Z|1|B5|U|4728, 7O7Z|1|B5|C|4729

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|B5|C|4709
7O7Z|1|B5|A|4710
7O7Z|1|B5|PSU|4711
*
7O7Z|1|B5|G|4725
7O7Z|1|B5|C|4726
7O7Z|1|B5|U|4727
7O7Z|1|B5|U|4728
7O7Z|1|B5|C|4729
7O7Z|1|B5|U|4730
*
7O7Z|1|B5|A|4799
7O7Z|1|B5|A|4800
7O7Z|1|B5|G|4801
7O7Z|1|B5|G|4802

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BP

uL22

Chain Bd

eL31