J3_7O81_030

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAC*GAGAAUU*ACACUU

Length

16 nucleotides

Bulged bases

7O81|1|B8|A|62, 7O81|1|B8|U|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|B8|A|43
7O81|1|B8|A|44
7O81|1|B8|C|45
*
7O81|1|B8|G|58
7O81|1|B8|A|59
7O81|1|B8|G|60
7O81|1|B8|A|61
7O81|1|B8|A|62
7O81|1|B8|U|63
7O81|1|B8|U|64
*
7O81|1|B8|A|95
7O81|1|B8|C|96
7O81|1|B8|A|97
7O81|1|B8|C|98
7O81|1|B8|U|99
7O81|1|B8|U|100

Current chains

Chain B8

5.8S rRNA

Nearby chains

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BX

uL23

Chain Bh

uL29

Chain Bj

Ribosomal protein L37

Chain Bl

eL39