J3_7O81_033

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGAUCAAAACCAACCC*GGCGGCUUUG*CUAG

Length

31 nucleotides

Bulged bases

7O81|1|A2|U|287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|A2|C|223
7O81|1|A2|A|224
7O81|1|A2|G|225
7O81|1|A2|A|226
7O81|1|A2|U|227
7O81|1|A2|C|228
7O81|1|A2|A|229
7O81|1|A2|A|230
7O81|1|A2|A|231
7O81|1|A2|A|232
7O81|1|A2|C|233
7O81|1|A2|C|234
7O81|1|A2|A|235
7O81|1|A2|A|236
7O81|1|A2|C|237
7O81|1|A2|C|238
7O81|1|A2|C|239
*
7O81|1|A2|G|280
7O81|1|A2|G|281
7O81|1|A2|C|282
7O81|1|A2|G|283
7O81|1|A2|G|284
7O81|1|A2|C|285
7O81|1|A2|U|286
7O81|1|A2|U|287
7O81|1|A2|U|288
7O81|1|A2|G|289
*
7O81|1|A2|C|296
7O81|1|A2|U|297
7O81|1|A2|A|298
7O81|1|A2|G|299

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

Ribosomal protein eS4

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11