J3_7O81_034
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- U(OMG)GA*UUAAGAG*CAUUA
- Length
- 16 nucleotides
- Bulged bases
- 7O81|1|A2|G|922
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O81|1|A2|U|683
7O81|1|A2|OMG|684
7O81|1|A2|G|685
7O81|1|A2|A|686
*
7O81|1|A2|U|918
7O81|1|A2|U|919
7O81|1|A2|A|920
7O81|1|A2|A|921
7O81|1|A2|G|922
7O81|1|A2|A|923
7O81|1|A2|G|924
*
7O81|1|A2|C|1020
7O81|1|A2|A|1021
7O81|1|A2|U|1022
7O81|1|A2|U|1023
7O81|1|A2|A|1024
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AA
- 40S ribosomal protein S27
- Chain Ag
- 40S ribosomal protein S7
- Chain Ak
- 40S ribosomal protein S11
- Chain Am
- uS15
- Chain Av
- Ribosomal protein S15a
- Chain Aw
- 40S ribosomal protein S23
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