J3_7O81_038

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

7O81|1|B5|G|219, 7O81|1|B5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|B5|C|196
7O81|1|B5|A|197
7O81|1|B5|A|198
7O81|1|B5|G|199
*
7O81|1|B5|C|215
7O81|1|B5|C|216
7O81|1|B5|C|217
7O81|1|B5|A|218
7O81|1|B5|G|219
7O81|1|B5|C|220
7O81|1|B5|C|221
7O81|1|B5|C|222
7O81|1|B5|G|223
7O81|1|B5|U|224
7O81|1|B5|G|225
7O81|1|B5|G|226
7O81|1|B5|A|227
7O81|1|B5|C|228
*
7O81|1|B5|G|240
7O81|1|B5|G|241
7O81|1|B5|U|242
7O81|1|B5|A|243
7O81|1|B5|G|244

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BY

Ribosomal protein L26