J3_7O81_041

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|B5|C|451
7O81|1|B5|A|452
7O81|1|B5|G|453
7O81|1|B5|U|454
7O81|1|B5|C|455
*
7O81|1|B5|G|695
7O81|1|B5|U|696
7O81|1|B5|G|697
7O81|1|B5|C|698
7O81|1|B5|G|699
*
7O81|1|B5|C|1236
7O81|1|B5|G|1237
7O81|1|B5|A|1238
7O81|1|B5|U|1239
7O81|1|B5|G|1240

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain Be

eL32

Chain Bf

eL33

Chain Br

Ribosomal protein eL28