J3_7ODE_005

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ODE_005 not in the Motif Atlas

Homologous match to J3_8VTW_004

Geometric discrepancy: 0.1653

The information below is about J3_8VTW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.5

Basepair signature

cWW-cWW-cWW-cWW-tSH-F-F-F

Number of instances in this motif group

5

Unit IDs

7ODE|1|I|C|1298
7ODE|1|I|G|1299
7ODE|1|I|G|1300
7ODE|1|I|A|1301
7ODE|1|I|A|1302
7ODE|1|I|G|1303
*
7ODE|1|I|C|1625
7ODE|1|I|A|1626
7ODE|1|I|G|1627
*
7ODE|1|I|C|1639
7ODE|1|I|A|1640
7ODE|1|I|A|1641
7ODE|1|I|G|1642

Current chains

Chain I

23S rRNA

Nearby chains