J3_7ODE_007

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ODE_007 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1079

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

7ODE|1|I|U|1344
7ODE|1|I|C|1345
7ODE|1|I|G|1346
7ODE|1|I|A|1347
7ODE|1|I|C|1348
7ODE|1|I|C|1349
*
7ODE|1|I|G|1382
7ODE|1|I|A|1383
7ODE|1|I|A|1384
7ODE|1|I|A|1385
*
7ODE|1|I|U|1402
7ODE|1|I|A|1403

Current chains

Chain I

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L23