J3_7ODE_012

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7ODE|1|I|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ODE_012 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0701

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7ODE|1|I|G|297
7ODE|1|I|G|298
7ODE|1|I|A|299
7ODE|1|I|A|300
7ODE|1|I|G|301
*
7ODE|1|I|C|316
7ODE|1|I|G|317
7ODE|1|I|C|318
7ODE|1|I|G|319
7ODE|1|I|A|320
7ODE|1|I|U|321
7ODE|1|I|A|322
7ODE|1|I|C|323
7ODE|1|I|A|324
7ODE|1|I|G|325
*
7ODE|1|I|C|337
7ODE|1|I|G|338
7ODE|1|I|U|339
7ODE|1|I|A|340
7ODE|1|I|C|341

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain c

50S ribosomal protein L24