3D structure

PDB id
7OF1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AGCU*ACGUUCUAGCAUUCAAG*UGAU
Length
25 nucleotides
Bulged bases
7OF1|1|1|G|2549, 7OF1|1|1|U|2550, 7OF1|1|1|U|2551, 7OF1|1|1|A|2554, 7OF1|1|1|U|2558, 7OF1|1|1|U|2559, 7OF1|1|1|C|2560
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OF1_012 not in the Motif Atlas
Homologous match to J3_8C3A_009
Geometric discrepancy: 0.2127
The information below is about J3_8C3A_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_02167.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
Number of instances in this motif group
1

Unit IDs

7OF1|1|1|A|2529
7OF1|1|1|G|2530
7OF1|1|1|C|2531
7OF1|1|1|U|2532
*
7OF1|1|1|A|2547
7OF1|1|1|C|2548
7OF1|1|1|G|2549
7OF1|1|1|U|2550
7OF1|1|1|U|2551
7OF1|1|1|C|2552
7OF1|1|1|U|2553
7OF1|1|1|A|2554
7OF1|1|1|G|2555
7OF1|1|1|C|2556
7OF1|1|1|A|2557
7OF1|1|1|U|2558
7OF1|1|1|U|2559
7OF1|1|1|C|2560
7OF1|1|1|A|2561
7OF1|1|1|A|2562
7OF1|1|1|G|2563
*
7OF1|1|1|U|2578
7OF1|1|1|G|2579
7OF1|1|1|A|2580
7OF1|1|1|U|2581

Current chains

Chain 1
25S rRNA

Nearby chains

Chain A
60S ribosomal protein L2-A
Chain G
60S ribosomal protein L8-A
Chain X
60S ribosomal protein L25
Chain Z
60S ribosomal protein L27-A
Chain c
60S ribosomal protein L30
Chain g
60S ribosomal protein L34-A
Chain p
60S ribosomal protein L43-A

Coloring options:


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