J3_7OF1_020

3D structure

PDB id

7OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUGG*CGUUUCAAAG*CACCAU

Length

22 nucleotides

Bulged bases

7OF1|1|1|U|1554, 7OF1|1|1|U|1555, 7OF1|1|1|C|1556, 7OF1|1|1|A|1558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OF1|1|1|A|1537
7OF1|1|1|G|1538
7OF1|1|1|A|1539
7OF1|1|1|U|1540
7OF1|1|1|G|1541
7OF1|1|1|G|1542
*
7OF1|1|1|C|1551
7OF1|1|1|G|1552
7OF1|1|1|U|1553
7OF1|1|1|U|1554
7OF1|1|1|U|1555
7OF1|1|1|C|1556
7OF1|1|1|A|1557
7OF1|1|1|A|1558
7OF1|1|1|A|1559
7OF1|1|1|G|1560
*
7OF1|1|1|C|1579
7OF1|1|1|A|1580
7OF1|1|1|C|1581
7OF1|1|1|C|1582
7OF1|1|1|A|1583
7OF1|1|1|U|1584

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain A

60S ribosomal protein L2-A

Chain G

60S ribosomal protein L8-A

Chain N

60S ribosomal protein L15-A

Chain X

60S ribosomal protein L25

Chain j

60S ribosomal protein L37-A