J3_7OG4_010

3D structure

PDB id

7OG4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

7OG4|1|XA|G|1918, 7OG4|1|XA|G|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OG4_010 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1135

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7OG4|1|XA|C|1915
7OG4|1|XA|G|1916
7OG4|1|XA|A|1917
7OG4|1|XA|G|1918
7OG4|1|XA|C|1919
7OG4|1|XA|U|1920
7OG4|1|XA|A|1921
*
7OG4|1|XA|U|1983
7OG4|1|XA|A|1984
7OG4|1|XA|G|1985
*
7OG4|1|XA|C|2001
7OG4|1|XA|G|2002
7OG4|1|XA|A|2003
7OG4|1|XA|G|2004

Current chains

Chain XA

16S mitochondrial rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain 9

39S ribosomal protein L41, mitochondrial

Chain XD

39S ribosomal protein L2, mitochondrial