J3_7OHP_006

3D structure

PDB id

7OHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AC*GAUACGUAA*UCGAAUCU

Length

19 nucleotides

Bulged bases

7OHP|1|2|C|62, 7OHP|1|2|G|95

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OHP|1|2|A|44
7OHP|1|2|C|45
*
7OHP|1|2|G|58
7OHP|1|2|A|59
7OHP|1|2|U|60
7OHP|1|2|A|61
7OHP|1|2|C|62
7OHP|1|2|G|63
7OHP|1|2|U|64
7OHP|1|2|A|65
7OHP|1|2|A|66
*
7OHP|1|2|U|93
7OHP|1|2|C|94
7OHP|1|2|G|95
7OHP|1|2|A|96
7OHP|1|2|A|97
7OHP|1|2|U|98
7OHP|1|2|C|99
7OHP|1|2|U|100

Current chains

Chain 2

5.8S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain Y

60S ribosomal protein L26-A

Chain h

60S ribosomal protein L35-A

Chain j

60S ribosomal protein L37-A

Chain v

Nucleolar protein 16