J3_7OHP_007
3D structure
- PDB id
- 7OHP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 7OHP|1|1|U|117, 7OHP|1|1|G|120, 7OHP|1|1|A|121, 7OHP|1|1|U|147, 7OHP|1|1|G|156, 7OHP|1|1|A|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OHP|1|1|C|113
7OHP|1|1|A|114
7OHP|1|1|A|115
7OHP|1|1|A|116
7OHP|1|1|U|117
7OHP|1|1|U|118
7OHP|1|1|U|119
7OHP|1|1|G|120
7OHP|1|1|A|121
7OHP|1|1|A|122
7OHP|1|1|A|123
7OHP|1|1|U|124
*
7OHP|1|1|A|144
7OHP|1|1|G|145
7OHP|1|1|U|146
7OHP|1|1|U|147
7OHP|1|1|G|148
7OHP|1|1|U|149
7OHP|1|1|A|150
7OHP|1|1|A|151
7OHP|1|1|U|152
7OHP|1|1|U|153
7OHP|1|1|U|154
7OHP|1|1|G|155
7OHP|1|1|G|156
7OHP|1|1|A|157
7OHP|1|1|G|158
*
7OHP|1|1|C|263
7OHP|1|1|G|264
7OHP|1|1|A|265
7OHP|1|1|A|266
7OHP|1|1|G|267
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- ATP-dependent RNA helicase HAS1
- Chain G
- 60S ribosomal protein L8-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
- Chain m
- Ribosome biogenesis protein ERB1
- Chain n
- Pescadillo homolog
- Chain v
- Nucleolar protein 16
Coloring options: