Loop J3_7OHP

3D structure

PDB id: 7OHP (explore in PDB, NAKB, or RNA 3D Hub)
Description: Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: AUAUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAUUU
Length: 36 nucleotides
Bulged bases: 7OHP|1|1|A|3172, 7OHP|1|1|G|3173, 7OHP|1|1|A|3215, 7OHP|1|1|G|3216, 7OHP|1|1|C|3217, 7OHP|1|1|G|3219, 7OHP|1|1|A|3268, 7OHP|1|1|U|3270, 7OHP|1|1|C|3272, 7OHP|1|1|U|3275, 7OHP|1|1|G|3276, 7OHP|1|1|U|3277
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7OHP|1|1|A|3168
7OHP|1|1|U|3169
7OHP|1|1|A|3170
7OHP|1|1|U|3171
7OHP|1|1|A|3172
7OHP|1|1|G|3173
7OHP|1|1|A|3174
7OHP|1|1|U|3175
7OHP|1|1|G|3176
*
7OHP|1|1|C|3212
7OHP|1|1|A|3213
7OHP|1|1|U|3214
7OHP|1|1|A|3215
7OHP|1|1|G|3216
7OHP|1|1|C|3217
7OHP|1|1|A|3218
7OHP|1|1|G|3219
7OHP|1|1|G|3220
*
7OHP|1|1|C|3265
7OHP|1|1|G|3266
7OHP|1|1|A|3267
7OHP|1|1|A|3268
7OHP|1|1|U|3269
7OHP|1|1|U|3270
7OHP|1|1|G|3271
7OHP|1|1|C|3272
7OHP|1|1|A|3273
7OHP|1|1|A|3274
7OHP|1|1|U|3275
7OHP|1|1|G|3276
7OHP|1|1|U|3277
7OHP|1|1|C|3278
7OHP|1|1|A|3279
7OHP|1|1|U|3280
7OHP|1|1|U|3281
7OHP|1|1|U|3282

Current chains

Chain 1: 25S rRNA

Nearby chains

Chain E: 60S ribosomal protein L6-A
Chain M: 60S ribosomal protein L14-A
Chain O: 60S ribosomal protein L16-A
Chain f: 60S ribosomal protein L33-A

J3_7OHP_008