J3_7OHV_001
3D structure
- PDB id
- 7OHV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 7OHV|1|1|G|120, 7OHV|1|1|A|121, 7OHV|1|1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OHV_001 not in the Motif Atlas
- Homologous match to J3_8P9A_042
- Geometric discrepancy: 0.2185
- The information below is about J3_8P9A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69230.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7OHV|1|1|C|113
7OHV|1|1|A|114
7OHV|1|1|A|115
7OHV|1|1|A|116
7OHV|1|1|U|117
7OHV|1|1|U|118
7OHV|1|1|U|119
7OHV|1|1|G|120
7OHV|1|1|A|121
7OHV|1|1|A|122
7OHV|1|1|A|123
*
7OHV|1|1|U|149
7OHV|1|1|A|150
7OHV|1|1|A|151
7OHV|1|1|U|152
7OHV|1|1|U|153
7OHV|1|1|U|154
7OHV|1|1|G|155
7OHV|1|1|G|156
7OHV|1|1|A|157
7OHV|1|1|G|158
*
7OHV|1|1|C|263
7OHV|1|1|G|264
7OHV|1|1|A|265
7OHV|1|1|A|266
7OHV|1|1|G|267
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain D
- ATP-dependent RNA helicase HAS1
- Chain G
- 60S ribosomal protein L8-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
- Chain m
- Ribosome biogenesis protein ERB1
- Chain v
- Nucleolar protein 16
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