3D structure

PDB id
7OI0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E.coli delta rbfA pre-30S ribosomal subunit class D
Experimental method
ELECTRON MICROSCOPY
Resolution
2.76 Å

Loop

Sequence
GGUA*UACCGGUGG*CGGCC
Length
18 nucleotides
Bulged bases
7OI0|1|A|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OI0_003 not in the Motif Atlas
Geometric match to J3_4V88_033
Geometric discrepancy: 0.3119
The information below is about J3_4V88_033
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_38616.1
Basepair signature
cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
Number of instances in this motif group
1

Unit IDs

7OI0|1|A|G|670
7OI0|1|A|G|671
7OI0|1|A|U|672
7OI0|1|A|A|673
*
7OI0|1|A|U|717
7OI0|1|A|A|718
7OI0|1|A|C|719
7OI0|1|A|C|720
7OI0|1|A|G|721
7OI0|1|A|G|722
7OI0|1|A|U|723
7OI0|1|A|G|724
7OI0|1|A|G|725
*
7OI0|1|A|C|732
7OI0|1|A|G|733
7OI0|1|A|G|734
7OI0|1|A|C|735
7OI0|1|A|C|736

Current chains

Chain A
16S rRNA

Nearby chains

Chain F
30S ribosomal protein S6, fully modified isoform
Chain O
30S ribosomal protein S15
Chain R
30S ribosomal protein S18

Coloring options:


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