J3_7OI7_001

3D structure

PDB id

7OI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

7OI7|1|A|G|248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OI7_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1035

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7OI7|1|A|C|245
7OI7|1|A|G|246
7OI7|1|A|A|247
7OI7|1|A|G|248
7OI7|1|A|C|249
7OI7|1|A|U|250
7OI7|1|A|A|251
*
7OI7|1|A|U|313
7OI7|1|A|A|314
7OI7|1|A|G|315
*
7OI7|1|A|C|331
7OI7|1|A|G|332
7OI7|1|A|A|333
7OI7|1|A|G|334

Current chains

Chain A

16S rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain 9

39S ribosomal protein L41, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial