J3_7OIF_029

3D structure

PDB id

7OIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7OIF|1|1|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OIF_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0532

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7OIF|1|1|G|297
7OIF|1|1|G|298
7OIF|1|1|A|299
7OIF|1|1|A|300
7OIF|1|1|G|301
*
7OIF|1|1|C|316
7OIF|1|1|G|317
7OIF|1|1|C|318
7OIF|1|1|G|319
7OIF|1|1|A|320
7OIF|1|1|U|321
7OIF|1|1|A|322
7OIF|1|1|C|323
7OIF|1|1|A|324
7OIF|1|1|G|325
*
7OIF|1|1|C|337
7OIF|1|1|G|338
7OIF|1|1|U|339
7OIF|1|1|A|340
7OIF|1|1|C|341

Current chains

Chain 1

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain T

50S ribosomal protein L24