J3_7OIF_034

3D structure

PDB id

7OIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

7OIF|1|2|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OIF_034 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.119

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7OIF|1|2|C|990
7OIF|1|2|U|991
7OIF|1|2|U|992
7OIF|1|2|G|993
7OIF|1|2|A|994
7OIF|1|2|C|995
7OIF|1|2|A|996
7OIF|1|2|U|997
*
7OIF|1|2|A|1044
7OIF|1|2|C|1045
7OIF|1|2|A|1046
7OIF|1|2|G|1047
*
7OIF|1|2|C|1210
7OIF|1|2|U|1211
7OIF|1|2|U|1212
7OIF|1|2|A|1213
7OIF|1|2|C|1214
7OIF|1|2|G|1215

Current chains

Chain 2

16S rRNA

Nearby chains

Chain r

30S ribosomal protein S14