J3_7OII_004

3D structure

PDB id

7OII (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OII_004 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0618

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7OII|1|1|C|698
7OII|1|1|A|699
7OII|1|1|G|700
*
7OII|1|1|C|732
7OII|1|1|G|733
7OII|1|1|A|734
7OII|1|1|A|735
7OII|1|1|C|736
*
7OII|1|1|G|760
7OII|1|1|A|761
7OII|1|1|U|762
7OII|1|1|G|763

Current chains

Chain 1

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2