J3_7OII_014

3D structure

PDB id

7OII (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OII_014 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.0963

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7OII|1|2|G|46
7OII|1|2|C|47
*
7OII|1|2|G|361
7OII|1|2|G|362
7OII|1|2|A|363
7OII|1|2|A|364
7OII|1|2|U|365
7OII|1|2|A|366
7OII|1|2|U|367
*
7OII|1|2|A|393
7OII|1|2|G|394
7OII|1|2|C|395

Current chains

Chain 2

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S12

Chain t

30S ribosomal protein S16