J3_7OIZ_035
3D structure
- PDB id
- 7OIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 70S ribosome stalled with TnaC peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 7OIZ|1|a|U|2334, 7OIZ|1|a|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OIZ_035 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.1177
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
7OIZ|1|a|C|2295
7OIZ|1|a|U|2296
7OIZ|1|a|A|2297
7OIZ|1|a|A|2298
7OIZ|1|a|U|2299
*
7OIZ|1|a|A|2317
7OIZ|1|a|G|2318
7OIZ|1|a|G|2319
7OIZ|1|a|U|2320
7OIZ|1|a|U|2321
7OIZ|1|a|A|2322
7OIZ|1|a|G|2323
*
7OIZ|1|a|C|2332
7OIZ|1|a|A|2333
7OIZ|1|a|U|2334
7OIZ|1|a|A|2335
7OIZ|1|a|A|2336
7OIZ|1|a|G|2337
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain V
- Transfer RNA; tRNA
- Chain b
- Small subunit ribosomal RNA fragment; SSU rRNA fragment
- Chain f
- 50S ribosomal protein L5
- Chain n
- 50S ribosomal protein L18
- Chain v
- 50S ribosomal protein L27
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