J3_7OJ0_001

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OJ0_001 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.096

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7OJ0|1|A|G|46
7OJ0|1|A|C|47
*
7OJ0|1|A|G|361
7OJ0|1|A|G|362
7OJ0|1|A|A|363
7OJ0|1|A|A|364
7OJ0|1|A|U|365
7OJ0|1|A|A|366
7OJ0|1|A|U|367
*
7OJ0|1|A|A|393
7OJ0|1|A|G|394
7OJ0|1|A|C|395

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16