J3_7OJ0_016

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7OJ0|1|a|U|686, 7OJ0|1|a|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OJ0_016 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0623

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7OJ0|1|a|U|683
7OJ0|1|a|G|684
7OJ0|1|a|A|685
7OJ0|1|a|U|686
7OJ0|1|a|C|687
7OJ0|1|a|U|688
7OJ0|1|a|A|689
*
7OJ0|1|a|U|773
7OJ0|1|a|G|774
7OJ0|1|a|G|775
*
7OJ0|1|a|C|791
7OJ0|1|a|A|792
7OJ0|1|a|A|793
7OJ0|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2