J3_7OJ0_030

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

7OJ0|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OJ0_030 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.149

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7OJ0|1|A|C|990
7OJ0|1|A|U|991
7OJ0|1|A|U|992
7OJ0|1|A|G|993
7OJ0|1|A|A|994
7OJ0|1|A|C|995
7OJ0|1|A|A|996
7OJ0|1|A|U|997
*
7OJ0|1|A|A|1044
7OJ0|1|A|C|1045
7OJ0|1|A|A|1046
7OJ0|1|A|G|1047
*
7OJ0|1|A|C|1210
7OJ0|1|A|U|1211
7OJ0|1|A|U|1212
7OJ0|1|A|A|1213
7OJ0|1|A|C|1214
7OJ0|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain 8

Peptide chain release factor RF2

Chain N

30S ribosomal protein S14