3D structure

PDB id
7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
7OJ0|1|a|A|2388, 7OJ0|1|a|U|2390, 7OJ0|1|a|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OJ0_036 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.0618
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

7OJ0|1|a|G|2282
7OJ0|1|a|C|2283
7OJ0|1|a|A|2284
*
7OJ0|1|a|U|2384
7OJ0|1|a|C|2385
7OJ0|1|a|A|2386
7OJ0|1|a|U|2387
7OJ0|1|a|A|2388
7OJ0|1|a|G|2389
7OJ0|1|a|U|2390
7OJ0|1|a|G|2391
7OJ0|1|a|A|2392
7OJ0|1|a|U|2393
7OJ0|1|a|C|2394
7OJ0|1|a|C|2395
*
7OJ0|1|a|G|2421
7OJ0|1|a|C|2422
7OJ0|1|a|U|2423
7OJ0|1|a|C|2424
7OJ0|1|a|A|2425
7OJ0|1|a|A|2426
7OJ0|1|a|C|2427

Current chains

Chain a
23S rRNA

Nearby chains

Chain 0
50S ribosomal protein L33
Chain 2
50S ribosomal protein L35
Chain k
50S ribosomal protein L15
Chain v
50S ribosomal protein L27

Coloring options:


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