J3_7OLC_033

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGACUU*AGG*CGUAAUG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OLC|1|1|C|428
7OLC|1|1|A|429
7OLC|1|1|G|430
7OLC|1|1|A|431
7OLC|1|1|C|432
7OLC|1|1|U|433
7OLC|1|1|U|434
*
7OLC|1|1|A|484
7OLC|1|1|G|485
7OLC|1|1|G|486
*
7OLC|1|1|C|606
7OLC|1|1|G|607
7OLC|1|1|U|608
7OLC|1|1|A|609
7OLC|1|1|A|610
7OLC|1|1|U|611
7OLC|1|1|G|612

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LP

60S ribosomal protein l17-like protein

Chain Le

60S ribosomal protein L32-like protein

Chain Lf

60S ribosomal protein l33-like protein

Chain Lq

Putative 60S ribosomal protein