J3_7OLC_047

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUUAAAAACCAAUGC*GCUUUCUG*CAU

Length

28 nucleotides

Bulged bases

7OLC|1|2|U|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OLC|1|2|A|208
7OLC|1|2|G|209
7OLC|1|2|A|210
7OLC|1|2|U|211
7OLC|1|2|U|212
7OLC|1|2|A|213
7OLC|1|2|A|214
7OLC|1|2|A|215
7OLC|1|2|A|216
7OLC|1|2|A|217
7OLC|1|2|C|218
7OLC|1|2|C|219
7OLC|1|2|A|220
7OLC|1|2|A|221
7OLC|1|2|U|222
7OLC|1|2|G|223
7OLC|1|2|C|224
*
7OLC|1|2|G|233
7OLC|1|2|C|234
7OLC|1|2|U|235
7OLC|1|2|U|236
7OLC|1|2|U|237
7OLC|1|2|C|238
7OLC|1|2|U|239
7OLC|1|2|G|240
*
7OLC|1|2|C|247
7OLC|1|2|A|248
7OLC|1|2|U|249

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SG

40S ribosomal protein S6

Chain SL

40S ribosomal protein S11-like protein