J3_7OLC_053
3D structure
- PDB id
- 7OLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at idle POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 7OLC|1|3|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OLC_053 not in the Motif Atlas
- Homologous match to J3_8C3A_059
- Geometric discrepancy: 0.1207
- The information below is about J3_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7OLC|1|3|C|9
7OLC|1|3|C|10
7OLC|1|3|A|11
7OLC|1|3|U|12
7OLC|1|3|A|13
7OLC|1|3|C|14
*
7OLC|1|3|G|66
7OLC|1|3|G|67
*
7OLC|1|3|U|110
7OLC|1|3|G|111
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- 60S ribosomal protein l5-like protein
- Chain LI
- 60S ribosomal protein L10-like protein
- Chain LJ
- Putative ribosomal protein
- Chain LT
- 60S ribosomal protein l21-like protein
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