J3_7OLD_009

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUAG*CGUU*GUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OLD|1|1|C|1521
7OLD|1|1|A|1522
7OLD|1|1|U|1523
7OLD|1|1|A|1524
7OLD|1|1|G|1525
*
7OLD|1|1|C|1534
7OLD|1|1|G|1535
7OLD|1|1|U|1536
7OLD|1|1|U|1537
*
7OLD|1|1|G|1561
7OLD|1|1|U|1562
7OLD|1|1|G|1563

Current chains

Chain 1

26S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain LG

60S ribosomal protein L8

Chain LN

Ribosomal protein L15

Chain LX

60S ribosomal protein L25-like protein

Chain Lj

Ribosomal protein L37