J3_7OLD_012
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGCU*AACUUCUGGAGUUAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 7OLD|1|1|C|2510, 7OLD|1|1|U|2511, 7OLD|1|1|U|2512, 7OLD|1|1|G|2515
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OLD_012 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.2522
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
7OLD|1|1|G|2492
7OLD|1|1|G|2493
7OLD|1|1|C|2494
7OLD|1|1|U|2495
*
7OLD|1|1|A|2508
7OLD|1|1|A|2509
7OLD|1|1|C|2510
7OLD|1|1|U|2511
7OLD|1|1|U|2512
7OLD|1|1|C|2513
7OLD|1|1|U|2514
7OLD|1|1|G|2515
7OLD|1|1|G|2516
7OLD|1|1|A|2517
7OLD|1|1|G|2518
7OLD|1|1|U|2519
7OLD|1|1|U|2520
7OLD|1|1|A|2521
7OLD|1|1|A|2522
7OLD|1|1|G|2523
*
7OLD|1|1|C|2537
7OLD|1|1|G|2538
7OLD|1|1|A|2539
7OLD|1|1|C|2540
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LG
- 60S ribosomal protein L8
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein l30-like protein
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lp
- 60S ribosomal protein L43-like protein
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