J3_7OLD_019
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUCA*UAACAACUG*CAUUC
- Length
- 18 nucleotides
- Bulged bases
- 7OLD|1|2|C|932
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OLD_019 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1438
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7OLD|1|2|G|879
7OLD|1|2|U|880
7OLD|1|2|C|881
7OLD|1|2|A|882
*
7OLD|1|2|U|926
7OLD|1|2|A|927
7OLD|1|2|A|928
7OLD|1|2|C|929
7OLD|1|2|A|930
7OLD|1|2|A|931
7OLD|1|2|C|932
7OLD|1|2|U|933
7OLD|1|2|G|934
*
7OLD|1|2|C|941
7OLD|1|2|A|942
7OLD|1|2|U|943
7OLD|1|2|U|944
7OLD|1|2|C|945
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain Lp
- 60S ribosomal protein L43-like protein
- Chain SB
- 40S ribosomal protein S1
- Chain SN
- 40S ribosomal protein S13-like protein
- Chain SO
- 40S ribosomal protein S14-like protein
- Chain Sa
- 40S ribosomal protein S26
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