J3_7OLD_023
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 7OLD|1|2|G|1196, 7OLD|1|2|G|1198, 7OLD|1|2|A|1200
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OLD_023 not in the Motif Atlas
- Geometric match to J3_8C3A_040
- Geometric discrepancy: 0.14
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7OLD|1|2|C|1177
7OLD|1|2|U|1178
7OLD|1|2|U|1179
7OLD|1|2|A|1180
7OLD|1|2|A|1181
7OLD|1|2|U|1182
7OLD|1|2|U|1183
7OLD|1|2|U|1184
*
7OLD|1|2|G|1195
7OLD|1|2|G|1196
7OLD|1|2|G|1197
7OLD|1|2|G|1198
7OLD|1|2|A|1199
7OLD|1|2|A|1200
7OLD|1|2|A|1201
7OLD|1|2|C|1202
7OLD|1|2|U|1203
7OLD|1|2|C|1204
7OLD|1|2|A|1205
7OLD|1|2|C|1206
*
7OLD|1|2|G|1450
7OLD|1|2|G|1451
7OLD|1|2|C|1452
7OLD|1|2|C|1453
7OLD|1|2|G|1454
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain B
- HABP4_PAI-RBP1 domain-containing protein
- Chain SP
- 40S ribosomal protein s15-like protein
- Chain SS
- Putative ribosomal protein
- Chain SU
- 40S ribosomal protein S20-like protein
- Chain Sd
- Ribosomal protein uS14
- Chain Sf
- 40S ribosomal protein S27a-like protein
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