J3_7OLD_043

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAGACG*CCUAGCAGG*CGUAUUGCAAUUUAGA

Length

31 nucleotides

Bulged bases

7OLD|1|1|A|3126, 7OLD|1|1|G|3127, 7OLD|1|1|A|3160, 7OLD|1|1|G|3161, 7OLD|1|1|C|3162, 7OLD|1|1|G|3164, 7OLD|1|1|A|3209, 7OLD|1|1|U|3211, 7OLD|1|1|C|3213, 7OLD|1|1|U|3216, 7OLD|1|1|U|3217, 7OLD|1|1|U|3218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OLD|1|1|U|3125
7OLD|1|1|A|3126
7OLD|1|1|G|3127
7OLD|1|1|A|3128
7OLD|1|1|C|3129
7OLD|1|1|G|3130
*
7OLD|1|1|C|3157
7OLD|1|1|C|3158
7OLD|1|1|U|3159
7OLD|1|1|A|3160
7OLD|1|1|G|3161
7OLD|1|1|C|3162
7OLD|1|1|A|3163
7OLD|1|1|G|3164
7OLD|1|1|G|3165
*
7OLD|1|1|C|3206
7OLD|1|1|G|3207
7OLD|1|1|U|3208
7OLD|1|1|A|3209
7OLD|1|1|U|3210
7OLD|1|1|U|3211
7OLD|1|1|G|3212
7OLD|1|1|C|3213
7OLD|1|1|A|3214
7OLD|1|1|A|3215
7OLD|1|1|U|3216
7OLD|1|1|U|3217
7OLD|1|1|U|3218
7OLD|1|1|A|3219
7OLD|1|1|G|3220
7OLD|1|1|A|3221

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain LP

60S ribosomal protein l17-like protein

Chain Lf

60S ribosomal protein l33-like protein