J3_7OLD_044

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUUAAAAACCAAUGC*GCUUUCUG*CAU

Length

28 nucleotides

Bulged bases

7OLD|1|2|U|212, 7OLD|1|2|U|237

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OLD|1|2|A|208
7OLD|1|2|G|209
7OLD|1|2|A|210
7OLD|1|2|U|211
7OLD|1|2|U|212
7OLD|1|2|A|213
7OLD|1|2|A|214
7OLD|1|2|A|215
7OLD|1|2|A|216
7OLD|1|2|A|217
7OLD|1|2|C|218
7OLD|1|2|C|219
7OLD|1|2|A|220
7OLD|1|2|A|221
7OLD|1|2|U|222
7OLD|1|2|G|223
7OLD|1|2|C|224
*
7OLD|1|2|G|233
7OLD|1|2|C|234
7OLD|1|2|U|235
7OLD|1|2|U|236
7OLD|1|2|U|237
7OLD|1|2|C|238
7OLD|1|2|U|239
7OLD|1|2|G|240
*
7OLD|1|2|C|247
7OLD|1|2|A|248
7OLD|1|2|U|249

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SG

40S ribosomal protein S6

Chain SL

40S ribosomal protein S11-like protein