J3_7OLD_049

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CACUGA*UCGUGCUGGGGAUA*UUCAACGAG

Length

29 nucleotides

Bulged bases

7OLD|1|2|U|1469, 7OLD|1|2|G|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OLD|1|2|C|1466
7OLD|1|2|A|1467
7OLD|1|2|C|1468
7OLD|1|2|U|1469
7OLD|1|2|G|1470
7OLD|1|2|A|1471
*
7OLD|1|2|U|1528
7OLD|1|2|C|1529
7OLD|1|2|G|1530
7OLD|1|2|U|1531
7OLD|1|2|G|1532
7OLD|1|2|C|1533
7OLD|1|2|U|1534
7OLD|1|2|G|1535
7OLD|1|2|G|1536
7OLD|1|2|G|1537
7OLD|1|2|G|1538
7OLD|1|2|A|1539
7OLD|1|2|U|1540
7OLD|1|2|A|1541
*
7OLD|1|2|U|1562
7OLD|1|2|U|1563
7OLD|1|2|C|1564
7OLD|1|2|A|1565
7OLD|1|2|A|1566
7OLD|1|2|C|1567
7OLD|1|2|G|1568
7OLD|1|2|A|1569
7OLD|1|2|G|1570

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein s5-like protein

Chain SS

Putative ribosomal protein

Chain ST

40S ribosomal protein S19-like protein

Chain SZ

40S ribosomal protein S25