J3_7OLD_051
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 7OLD|1|2|U|862
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OLD_051 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.1288
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7OLD|1|2|U|630
7OLD|1|2|G|631
7OLD|1|2|A|632
*
7OLD|1|2|U|859
7OLD|1|2|A|860
7OLD|1|2|A|861
7OLD|1|2|U|862
7OLD|1|2|A|863
7OLD|1|2|G|864
*
7OLD|1|2|C|960
7OLD|1|2|A|961
7OLD|1|2|U|962
7OLD|1|2|U|963
7OLD|1|2|A|964
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SH
- 40S ribosomal protein S7
- Chain SL
- 40S ribosomal protein S11-like protein
- Chain SN
- 40S ribosomal protein S13-like protein
- Chain SW
- 40S ribosomal protein S22-like protein
- Chain SX
- 40S ribosomal protein s23-like protein
- Chain Sb
- Ribosomal protein s27-like protein
Coloring options: