J3_7OPE_003

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

7OPE|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OPE_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1636

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7OPE|1|A|C|272
7OPE|1|A|A|273
7OPE|1|A|A|274
7OPE|1|A|A|275
7OPE|1|A|C|276
*
7OPE|1|A|G|295
7OPE|1|A|G|296
7OPE|1|A|G|297
7OPE|1|A|U|298
7OPE|1|A|U|299
7OPE|1|A|G|300
7OPE|1|A|U|301
7OPE|1|A|A|302
*
7OPE|1|A|U|416
7OPE|1|A|G|417

Current chains

Chain A

23S rRNA

Nearby chains