J3_7OPE_004

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7OPE|1|A|U|733, 7OPE|1|A|G|839, 7OPE|1|A|A|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OPE_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1008

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7OPE|1|A|U|730
7OPE|1|A|G|731
7OPE|1|A|A|732
7OPE|1|A|U|733
7OPE|1|A|C|734
7OPE|1|A|U|735
7OPE|1|A|A|736
*
7OPE|1|A|U|820
7OPE|1|A|A|821
7OPE|1|A|G|822
*
7OPE|1|A|C|838
7OPE|1|A|G|839
7OPE|1|A|A|840
7OPE|1|A|A|841

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2

Chain h

50S ribosomal protein L34