J3_7OPE_005

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OPE_005 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0909

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7OPE|1|A|C|745
7OPE|1|A|A|746
7OPE|1|A|G|747
*
7OPE|1|A|C|779
7OPE|1|A|G|780
7OPE|1|A|A|781
7OPE|1|A|A|782
7OPE|1|A|C|783
*
7OPE|1|A|G|807
7OPE|1|A|A|808
7OPE|1|A|U|809
7OPE|1|A|G|810

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2