J3_7OPE_011
3D structure
- PDB id
- 7OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUCAG*CGCAGAG*CACAAG
- Length
- 18 nucleotides
- Bulged bases
- 7OPE|1|A|C|2363
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OPE_011 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.4657
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
7OPE|1|A|C|2324
7OPE|1|A|U|2325
7OPE|1|A|C|2326
7OPE|1|A|A|2327
7OPE|1|A|G|2328
*
7OPE|1|A|C|2346
7OPE|1|A|G|2347
7OPE|1|A|C|2348
7OPE|1|A|A|2349
7OPE|1|A|G|2350
7OPE|1|A|A|2351
7OPE|1|A|G|2352
*
7OPE|1|A|C|2361
7OPE|1|A|A|2362
7OPE|1|A|C|2363
7OPE|1|A|A|2364
7OPE|1|A|A|2365
7OPE|1|A|G|2366
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain H
- 50S ribosomal protein L5
- Chain S
- 50S ribosomal protein L18
- Chain a
- 50S ribosomal protein L27
Coloring options: