J3_7OTC_006

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OTC_006 not in the Motif Atlas

Homologous match to J3_8VTW_004

Geometric discrepancy: 0.1919

The information below is about J3_8VTW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.5

Basepair signature

cWW-cWW-cWW-cWW-tSH-F-F-F

Number of instances in this motif group

5

Unit IDs

7OTC|1|A|C|1298
7OTC|1|A|G|1299
7OTC|1|A|G|1300
7OTC|1|A|A|1301
7OTC|1|A|A|1302
7OTC|1|A|G|1303
*
7OTC|1|A|C|1625
7OTC|1|A|A|1626
7OTC|1|A|G|1627
*
7OTC|1|A|C|1639
7OTC|1|A|A|1640
7OTC|1|A|A|1641
7OTC|1|A|G|1642

Current chains

Chain A

23S ribosomal RNA

Nearby chains