J3_7OTC_030

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7OTC|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OTC_030 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0592

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7OTC|1|A|G|297
7OTC|1|A|G|298
7OTC|1|A|A|299
7OTC|1|A|A|300
7OTC|1|A|G|301
*
7OTC|1|A|C|316
7OTC|1|A|G|317
7OTC|1|A|C|318
7OTC|1|A|G|319
7OTC|1|A|A|320
7OTC|1|A|U|321
7OTC|1|A|A|322
7OTC|1|A|C|323
7OTC|1|A|A|324
7OTC|1|A|G|325
*
7OTC|1|A|C|337
7OTC|1|A|G|338
7OTC|1|A|U|339
7OTC|1|A|A|340
7OTC|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24