3D structure

PDB id
7OTC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
7OTC|1|A|A|2388, 7OTC|1|A|U|2390, 7OTC|1|A|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OTC_032 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.0703
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

7OTC|1|A|G|2282
7OTC|1|A|C|2283
7OTC|1|A|A|2284
*
7OTC|1|A|U|2384
7OTC|1|A|C|2385
7OTC|1|A|A|2386
7OTC|1|A|U|2387
7OTC|1|A|A|2388
7OTC|1|A|G|2389
7OTC|1|A|U|2390
7OTC|1|A|G|2391
7OTC|1|A|A|2392
7OTC|1|A|U|2393
7OTC|1|A|C|2394
7OTC|1|A|C|2395
*
7OTC|1|A|G|2421
7OTC|1|A|C|2422
7OTC|1|A|U|2423
7OTC|1|A|C|2424
7OTC|1|A|A|2425
7OTC|1|A|A|2426
7OTC|1|A|C|2427

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L33
Chain 3
50S ribosomal protein L35
Chain L
50S ribosomal protein L15
Chain W
50S ribosomal protein L27

Coloring options:


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