J3_7P3K_032

3D structure

PDB id

7P3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7P3K|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7P3K_032 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0643

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7P3K|1|a|G|297
7P3K|1|a|G|298
7P3K|1|a|A|299
7P3K|1|a|A|300
7P3K|1|a|G|301
*
7P3K|1|a|C|316
7P3K|1|a|G|317
7P3K|1|a|C|318
7P3K|1|a|G|319
7P3K|1|a|A|320
7P3K|1|a|U|321
7P3K|1|a|A|322
7P3K|1|a|C|323
7P3K|1|a|A|324
7P3K|1|a|G|325
*
7P3K|1|a|C|337
7P3K|1|a|G|338
7P3K|1|a|U|339
7P3K|1|a|A|340
7P3K|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24