J3_7P48_003

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

7P48|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7P48_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1376

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7P48|1|A|C|272
7P48|1|A|A|273
7P48|1|A|A|274
7P48|1|A|A|275
7P48|1|A|C|276
*
7P48|1|A|G|295
7P48|1|A|G|296
7P48|1|A|G|297
7P48|1|A|U|298
7P48|1|A|U|299
7P48|1|A|G|300
7P48|1|A|U|301
7P48|1|A|A|302
*
7P48|1|A|U|415
7P48|1|A|G|416

Current chains

Chain A

23S rRNA

Nearby chains