J3_7P48_004

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7P48|1|A|U|731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7P48_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0862

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7P48|1|A|U|728
7P48|1|A|G|729
7P48|1|A|A|730
7P48|1|A|U|731
7P48|1|A|C|732
7P48|1|A|U|733
7P48|1|A|A|734
*
7P48|1|A|U|818
7P48|1|A|A|819
7P48|1|A|G|820
*
7P48|1|A|C|836
7P48|1|A|G|837
7P48|1|A|A|838
7P48|1|A|A|839

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2